To be completely frank, if the job was related to their major, "science", I would not hire either.
For the BJU graduate, I would wonder how they can so blatantly disregard the scientific method on matters that conflict with their religion.
For the online diploma mill grad, I tend to think negatively of those places in the first place, and secondly, its not like you can do lab work for an online degree, which is pretty darn necessary for nearly every one of the hard sciences.
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Not exactly related, but I once took a course at a school with a large online program and also numerous satellite campuses on military bases. I enrolled to get a Master's in International Relations. After one course, I was convinced that the program was a complete joke and dropped out. I never put this class on a resume or applications to other graduate schools (which ask you to list past coursework specifically) because it was so terrible that I did not want to be associated with it at all. I later got my Master's from U of Maryland, College Park.
Maybe it was just my own personal experience, but anyone I know who is generally a smart person and has a degree from one of these places typically says that it was a waste of time and wishes that they had never bothered with it. The only people I know who are "Phoenix Proud!" or whatever tend to be complete buffoons. Based on this, I doubt these degrees are worth more than the paper they're printed on. Again, this is just my exposure, but a lot of people who work for the government here in DC have online degrees because Federal hiring rules make zero distinction between a degree from U of Phoenix and Harvard.