Here's my take on the whole thing, lemme know what you guys think.
The Pats were deflating their balls post inspection. The NFL, per the Colt and Ravens complaints, intended to run a spot check, particularly if they got ahold of one of the Pats balls on the sideline to provide a 'probable cause' for the half-time check (hence NFL Executive VP Troy Vincent just 'by chance' walking the Colts sideline).
Referee Walter Anderson was given a minor heads up to watch the balls. He demonstrably didnt take this very seriously, as he lost track of the balls before kickoff and had a minor freakout. That being the case, its entirely likely Anderson either didnt pay careful attention to the pressure of the balls (he later improbably claimed all of them were delivered within .1psi of perfect, which is hard to fathom), or he didnt measure them at all (we discussed to death in this thread how uncomfortable the refs seemed with the gauges in the Bears video.
The NFL also had no idea that footballs lost pressure in cold or wet conditions. So when the tested the Patriots ball (three times!) allegedly on a complaint from a Colts player, once it showed under 12.5psi they figure, smoking gun. Therefore, as far as the NFL was concerned, if they get balls reading under 12.5psi at halftime, game set match. From that point of view, everything else makes a lot more sense.
Halftime comes and they bring all the balls in. Two different refs are assigned to measure, with 2 different gauges. The gauges (hilariously) dont match each other by about .3psi. The refs measure and all the Pats balls are under to some degree. As far as the sting goes, thats all they need to know. Again, they have no idea about the ideal gas law issues.
So either they fill up the Pats balls at that point, or they proceed to testing Colts balls. Either way, the gauges were switched between refs somehow.
The game finishes in a second half blowout. The report leaks with massively incorrect details, which doesnt really bother the NFL because from their point of view they have the Pats dead to rights, their balls were under inflated- they dont need any more evidence or a mechanism for who did it. In fact they might not want to know how it happened. Slap a fine on the Patriots organization after the season when all this is forgotten and move on, no need to bring the leagues most popular player into this. Simple story line- balls were underinflated at half time, Pats are guilty.
Then some wiseacre on the internet brings up the Ideal Gas Law, and the league suddenly has a much bigger problem. They havent done anything like the investigation needed to definitively prove anything from the measurements difference between pre-game and halftime. In fact they didnt even record the pregame pressures! This went from cut and dried to making the league look like the chumps.
First priority- kick the can past the season. Second priority- protect the leagues reputation. Its a GODSEND that they had the video tape of the ball boy, which introduces some new circumstancial evidence, but theyre going to need more and the pressure data is a joke. Enter Mr. Wells. Another godsend- Larry and Curly cant stop yapping on their phones. Now theyve got a pretty good circumstancial case, but it creates a new problem- Moe, AKA Tom Brady. This has now turned from a simple sweep and clear into a total cluster####. The more definitive the details, the bigger this story must get, so the simple slap on the wrist of the Pats is no longer viable. Now you have to go after the leagues golden boy, and you need as much proof or quasi-proof as you can pile up.
So the Wells report is a billion pages long with all kinds of scientific tests, but it glosses over some serious issues with the actual measurements. In fact it sugar coats the whole process, and roundly ignores the elephant in the room- that they had no reliable pre-game data to compare anything to. They also obfuscate a few details about the half time test to hide the fact that, unbeknown to the refs, the time differential between when each teams balls were tested would be a critical part of the testing, and that data was never recorded. And since you have no sound pre-game data, the only actual physical proof you can present is that the Colts balls lost less pressure than the Patriots balls. Wells papered that little detail over.
Finally- report comes out and the NFL, in typical cynical form, waits to see what the reaction will be before announcing the penalties.
The end?
Pick it apart boys, im curious to see what holes there are.